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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
UCEC cis rs9309473 1 rs10179134 chr2:73637519 ALMS1P chr2:73872046-73912692:+ 0.46 5.38 2.82E-7 Metabolite levels
UCEC cis rs1577917 1 rs1018184 chr6:86648475 SNHG5 chr6:86386726-86388451:- 0.43 5.18 6.91E-7 Response to antipsychotic treatment
UCEC cis rs9309473 1 rs10184268 chr2:73627044 ALMS1P chr2:73872046-73912692:+ 0.54 6.44 1.5E-9 Metabolite levels
UCEC cis rs9309473 1 rs10186501 chr2:73697844 ALMS1P chr2:73872046-73912692:+ 0.53 6.34 2.47E-9 Metabolite levels
UCEC cis rs9309473 1 rs10187416 chr2:73713741 ALMS1P chr2:73872046-73912692:+ 0.52 5.94 1.88E-8 Metabolite levels
UCEC cis rs9309473 1 rs10189574 chr2:73698518 ALMS1P chr2:73872046-73912692:+ 0.55 6.57 7.66E-10 Metabolite levels
UCEC cis rs9309473 1 rs10190219 chr2:73658331 ALMS1P chr2:73872046-73912692:+ 0.46 5.37 2.89E-7 Metabolite levels
UCEC cis rs60843830 1 rs10193373 chr2:281886 SH3YL1 chr2:218138-264810:- -0.5 -6.77 2.59E-10 Spherical equivalent (joint main effects and education interaction)
UCEC cis rs9309473 1 rs10193972 chr2:73717656 ALMS1P chr2:73872046-73912692:+ 0.53 6.29 3.29E-9 Metabolite levels
UCEC cis rs9309473 1 rs10207220 chr2:73785046 ALMS1P chr2:73872046-73912692:+ 0.47 5.53 1.39E-7 Metabolite levels
UCEC cis rs9815354 1 rs10212536 chr3:41827026 ULK4 chr3:41288091-42003660:- 0.51 5.91 2.21E-8 Diastolic blood pressure
UCEC cis rs2294008 1 rs10216533 chr8:143763690 PSCA chr8:143761875-143764142:+ 0.41 5.08 1.1E-6 Gastric adenocarcinoma (histologically verified);Non-cardia gastric cancer;Gastric cancer;Duodenal ulcer;Bladder cancer
UCEC cis rs10218795 1 rs10218795 chr1:145416056 NOTCH2NL chr1:145209111-145295525:+ 0.72 6.9 1.34E-10 Coronary heart disease
UCEC cis rs4294134 1 rs10234309 chr7:135311167 PL-5283 chr7:135347221-135378160:+ 0.53 5.4 2.52E-7 Paget's disease
UCEC cis rs2241437 1 rs1036554 chr2:86236099 LOC90784 chr2:86247339-86250991:- -0.69 -6.42 1.65E-9 Response to methylphenidate treatment in attention-deficit/hyperactivity disorder (blood pressure)